STRINGSTRING
Psed_3245 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3245" - ATPase-like protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3245ATPase-like protein (1005 aa)    
Predicted Functional Partners:
Psed_3246
Type 12 methyltransferase (359 aa)
              0.787
Psed_5542
Winged helix family transcriptional regulator (999 aa)
   
          0.637
Psed_6436
Transcriptional activator domain-containing protein (986 aa)
   
          0.631
Psed_1999
Winged helix family transcriptional regulator (1107 aa)
   
          0.597
Psed_3248
Amidase (489 aa)
              0.581
Psed_3247
Hypothetical protein (95 aa)
              0.581
Psed_4023
SARP family transcriptional regulator (568 aa)
   
          0.569
Psed_6282
Winged helix family transcriptional regulator (1070 aa)
   
          0.559
Psed_1917
Hypothetical protein (294 aa)
   
          0.556
Psed_2095
Hypothetical protein (206 aa)
   
          0.536
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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