STRINGSTRING
Psed_3274 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3274" - Major facilitator superfamily protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3274Major facilitator superfamily protein (446 aa)    
Predicted Functional Partners:
Psed_3273
Glycerophosphoryl diester phosphodiesterase (269 aa)
 
        0.869
Psed_3272
DNA polymerase LigD, polymerase domain-containing protein (661 aa)
              0.644
Psed_3275
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters (113 aa)
              0.590
Psed_1397
TAP domain-containing protein (530 aa)
   
        0.512
Psed_3271
BFD (2Fe-2S)-binding domain-containing protein (65 aa)
              0.503
Psed_3969
TAP domain-containing protein (551 aa)
   
        0.490
Psed_5678
Type I phosphodiesterase/nucleotide pyrophosphatase (381 aa)
   
        0.429
Psed_5998
NAD-glutamate dehydrogenase (1502 aa)
              0.412
Psed_4805
NAD-glutamate dehydrogenase (1619 aa)
              0.412
Psed_5656
ABC transporter (283 aa)
   
        0.403
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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