STRINGSTRING
Psed_3325 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3325" - HAD-superfamily hydrolase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3325HAD-superfamily hydrolase (233 aa)    
Predicted Functional Partners:
Psed_3326
Methionine synthase (1190 aa)
              0.937
Psed_3324
phosphoribosyl-ATP diphosphatase (87 aa)
            0.912
Psed_3320
tRNA (adenine-N(1)-)-methyltransferase (310 aa)
            0.833
Psed_3327
Hypothetical protein (298 aa)
              0.781
Psed_6238
HAD-superfamily hydrolase (260 aa)
   
          0.767
Psed_2940
HAD-superfamily hydrolase (216 aa)
   
          0.757
hisG
ATP phosphoribosyltransferase (294 aa)
   
        0.651
Psed_6236
Phosphoglycerate kinase (392 aa)
   
      0.588
Psed_3418
Phosphoglycerate kinase (392 aa)
   
      0.588
Psed_1785
Serine--pyruvate transaminase (372 aa)
   
   
  0.546
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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