STRINGSTRING
Psed_3341 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3341" - F420-dependent oxidoreductase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3341F420-dependent oxidoreductase (277 aa)    
Predicted Functional Partners:
Psed_3342
Amine oxidase (509 aa)
              0.632
Psed_5452
Ribonucleotide-diphosphate reductase subunit beta (324 aa)
   
          0.604
Psed_3539
F420-dependent protein (141 aa)
   
          0.535
Psed_5171
Hypothetical protein (168 aa)
   
          0.506
Psed_2970
Aldo/keto reductase (319 aa)
   
          0.500
Psed_4632
Hypothetical protein (141 aa)
   
          0.466
Psed_1952
Hypothetical protein (146 aa)
   
          0.455
Psed_4209
F420-dependent protein (143 aa)
   
          0.447
Psed_5016
Polyketide cyclase/dehydrase (188 aa)
   
          0.436
Psed_2692
Hypothetical protein (350 aa)
   
          0.430
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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