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Psed_3347 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3347" - Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3347Pyridoxamine 5’-phosphate oxidase-related FMN-binding protein (157 aa)    
Predicted Functional Partners:
Psed_0560
Hypothetical protein (67 aa)
   
          0.687
Psed_3346
Ornithine decarboxylase (374 aa)
              0.653
Psed_4003
Hypothetical protein (151 aa)
   
          0.610
Psed_4407
Hypothetical protein (261 aa)
   
          0.609
Psed_3222
Amidohydrolase (412 aa)
   
          0.609
Psed_2172
Haloacid dehalogenase (208 aa)
   
          0.598
Psed_3178
Type 11 methyltransferase (268 aa)
   
          0.574
Psed_5218
Ribonuclease BN (291 aa)
   
          0.550
Psed_5992
Ribonuclease BN (359 aa)
   
          0.548
Psed_3738
Hypothetical protein (153 aa)
   
          0.546
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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