STRINGSTRING
Psed_3352 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3352" - Cobalt transport protein CbiM in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3352Cobalt transport protein CbiM (120 aa)    
Predicted Functional Partners:
Psed_3351
Cobalamin (vitamin B12) biosynthesis protein CbiM (239 aa)
       
    0.977
Psed_3353
Cobalt ABC transporter inner membrane subunit CbiQ (254 aa)
       
    0.974
Psed_3354
Cobalt ABC transporter ATPase (243 aa)
       
    0.974
Psed_2327
Cobalamin (vitamin B12) biosynthesis protein CbiM (369 aa)
       
    0.849
Psed_2326
Cobalt ABC transporter inner membrane subunit CbiQ (316 aa)
       
    0.806
Psed_2325
Sulfate-transporting ATPase (268 aa)
       
    0.806
Psed_3350
Succinate-semialdehyde dehydrogenase (489 aa)
              0.534
Psed_3349
acyl-CoA dehydrogenase (395 aa)
              0.410
Psed_3348
acyl-CoA dehydrogenase (349 aa)
              0.410
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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