STRINGSTRING
Psed_3356 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3356" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3356Hypothetical protein (145 aa)    
Predicted Functional Partners:
Psed_3355
Hypothetical protein (467 aa)
 
   
  0.953
Psed_3357
Hypothetical protein (288 aa)
 
          0.857
Psed_3260
Hypothetical protein (300 aa)
 
   
  0.743
Psed_3358
Hypothetical protein (265 aa)
 
   
  0.732
Psed_1114
UvrD/REP helicase (682 aa)
   
        0.475
Psed_4532
Hypothetical protein (306 aa)
   
   
  0.449
rplI
50S ribosomal protein L9; Binds to the 23S rRNA (149 aa)
              0.412
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX (344 aa)
              0.412
Psed_2016
ABC transporter (272 aa)
              0.412
Psed_1734
ABC transporter (285 aa)
              0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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