STRINGSTRING
Psed_3357 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3357" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3357Hypothetical protein (288 aa)    
Predicted Functional Partners:
Psed_3356
Hypothetical protein (145 aa)
 
          0.857
Psed_2991
Type III restriction protein res subunit (576 aa)
   
          0.776
Psed_3358
Hypothetical protein (265 aa)
              0.706
Psed_6499
Hypothetical protein (59 aa)
   
          0.705
Psed_3355
Hypothetical protein (467 aa)
              0.698
Psed_4621
Helix-turn-helix domain-containing protein (123 aa)
   
          0.684
Psed_4573
RDD domain-containing protein (157 aa)
   
          0.683
Psed_3148
UvrD/REP helicase (798 aa)
   
          0.601
Psed_5171
Hypothetical protein (168 aa)
   
          0.581
Psed_0452
Hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands (214 aa)
   
          0.567
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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