STRINGSTRING
Psed_3375 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3375" - NLP/P60 protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3375NLP/P60 protein (438 aa)    
Predicted Functional Partners:
Psed_3374
ATPase (358 aa)
   
        0.763
Psed_3373
Hypothetical protein (325 aa)
   
        0.742
Psed_3372
Von Willebrand factor A (327 aa)
   
        0.737
Psed_3371
3-oxoacyl-ACP reductase (232 aa)
              0.581
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX (344 aa)
              0.539
Psed_3370
enoyl-ACP reductase (258 aa)
              0.508
Psed_1220
NLP/P60 protein (318 aa)
 
   
0.448
Psed_0835
Transglycosylase-like domain-containing protein (717 aa)
   
     
  0.444
recO
DNA repair protein recO; Involved in DNA repair and RecF pathway recombination (246 aa)
 
          0.421
Psed_3376
Hypothetical protein (533 aa)
              0.415
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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