STRINGSTRING
Psed_3385 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3385" - EmrB/QacA subfamily drug resistance transporter in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3385EmrB/QacA subfamily drug resistance transporter (480 aa)    
Predicted Functional Partners:
Psed_1803
Major facilitator superfamily protein (502 aa)
   
          0.775
Psed_0339
Bcr/CflA subfamily drug resistance transporter (456 aa)
 
          0.515
Psed_3036
Major facilitator superfamily protein (481 aa)
   
          0.499
Psed_6654
Single-strand binding protein (175 aa)
 
        0.496
Psed_3792
Amino acid permease (439 aa)
 
 
  0.483
Psed_3386
enoyl-CoA hydratase (278 aa)
   
   
  0.480
Psed_3588
DNA polymerase I (939 aa)
   
   
  0.479
Psed_6597
Isoquinoline 1-oxidoreductase (753 aa)
     
      0.472
Psed_6473
Carbon-monoxide dehydrogenase (806 aa)
     
      0.472
Psed_6472
Xanthine dehydrogenase (773 aa)
     
      0.472
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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