STRINGSTRING
Psed_3412 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3412" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3412Hypothetical protein (129 aa)    
Predicted Functional Partners:
Psed_5186
NUDIX hydrolase (161 aa)
 
          0.778
Psed_4506
Hypothetical protein (58 aa)
   
          0.654
Psed_2769
Cyclase (144 aa)
   
          0.586
Psed_5232
Hypothetical protein (506 aa)
   
          0.569
Psed_5274
AIG2 family protein (149 aa)
   
          0.555
Psed_3411
6-phosphogluconolactonase (260 aa)
              0.550
Psed_5491
Dual specificity protein phosphatase (154 aa)
   
          0.541
Psed_1586
Hypothetical protein (933 aa)
   
          0.538
Psed_5626
Hypothetical protein (526 aa)
   
          0.512
Psed_2423
Polyketide cyclase/dehydrase (149 aa)
   
          0.512
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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