STRINGSTRING
Psed_3414 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3414" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3414Hypothetical protein (264 aa)    
Predicted Functional Partners:
Psed_4499
Lipase class 2 (265 aa)
   
          0.687
Psed_1007
Hypothetical protein (297 aa)
   
          0.686
Psed_1586
Hypothetical protein (933 aa)
   
          0.635
Psed_3415
Electron transport protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters (115 aa)
              0.634
Psed_2645
Hypothetical protein (316 aa)
   
          0.625
Psed_4496
Hypothetical protein (375 aa)
   
          0.600
Psed_3416
Preprotein translocase subunit SecG (77 aa)
              0.544
Psed_0184
Hypothetical protein (701 aa)
   
          0.539
Psed_4444
Alpha/beta hydrolase (263 aa)
   
          0.537
Psed_1759
AIG2 family protein (127 aa)
   
          0.521
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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