STRINGSTRING
Psed_3438 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3438" - Cupin in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3438Cupin (154 aa)    
Predicted Functional Partners:
Psed_3439
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (400 aa)
              0.859
Psed_5908
Cupin (164 aa)
   
          0.745
Psed_6309
Hypothetical protein (303 aa)
   
          0.586
Psed_4319
LuxR family transcriptional regulator (938 aa)
   
          0.562
Psed_4073
Cupin (143 aa)
   
          0.552
Psed_3947
Transcriptional regulator (105 aa)
   
          0.548
Psed_4856
Transcriptional regulator (105 aa)
   
          0.548
Psed_3947
Transcriptional regulator (105 aa)
   
          0.548
Psed_5884
Hypothetical protein (287 aa)
   
          0.547
Psed_3437
Hypothetical protein (65 aa)
              0.536
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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