STRINGSTRING
Psed_3448 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3448" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3448Hypothetical protein (330 aa)    
Predicted Functional Partners:
Psed_3449
NADH dehydrogenase (ubiquinone) (462 aa)
              0.859
Psed_5985
Peptidase M48 Ste24p (298 aa)
   
          0.703
Psed_0092
Hypothetical protein (322 aa)
 
          0.610
Psed_3447
Hypothetical protein (60 aa)
              0.609
Psed_6170
Regulatory protein MerR (134 aa)
 
          0.515
Psed_3450
Hypothetical protein (251 aa)
              0.463
Psed_5251
Hypothetical protein (217 aa)
   
          0.454
Psed_4077
Hypothetical protein (393 aa)
   
          0.424
Psed_3901
Hypothetical protein (154 aa)
   
          0.416
Psed_1202
Resolvase domain-containing protein (592 aa)
 
          0.409
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (13%) [HD]