STRINGSTRING
Psed_3456 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3456" - Cyclic nucleotide-binding protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3456Cyclic nucleotide-binding protein (574 aa)    
Predicted Functional Partners:
Psed_3455
Hypothetical protein (87 aa)
 
          0.977
Psed_2329
Peroxidase (212 aa)
   
 
  0.933
Psed_3395
SufS subfamily cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine (439 aa)
   
 
  0.908
Psed_3633
Cystathionine gamma-synthase (390 aa)
   
 
  0.907
Psed_1840
Cystathionine gamma-lyase (366 aa)
   
 
  0.907
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP (344 aa)
   
 
    0.903
Psed_2214
Thioredoxin (154 aa)
 
 
  0.879
Psed_3480
Thioredoxin (128 aa)
 
 
  0.870
Psed_2215
Hypothetical protein (90 aa)
 
          0.843
Psed_6679
Thioredoxin (109 aa)
   
 
  0.826
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (13%) [HD]