STRINGSTRING
Psed_3467 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3467" - Integrase protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3467Integrase protein (331 aa)    
Predicted Functional Partners:
xerC
Tyrosine recombinase xerC (310 aa)
 
 
 
  0.830
Psed_3468
Integrase protein (573 aa)
 
 
 
0.770
Psed_3368
Integrase protein (425 aa)
   
          0.746
ruvB
Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing (346 aa)
 
 
  0.717
Psed_3948
Integrase protein (362 aa)
 
 
 
  0.711
Psed_4855
Integrase protein (362 aa)
 
 
 
  0.711
Psed_3948
Integrase protein (362 aa)
 
 
 
  0.711
Psed_4237
Cobyrinic acid ac-diamide synthase (314 aa)
 
   
  0.663
Psed_6686
Cobyrinic acid ac-diamide synthase (286 aa)
 
   
  0.638
Psed_3810
Cobyrinic acid ac-diamide synthase (311 aa)
 
   
  0.635
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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