STRINGSTRING
Psed_3512 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3512" - Hypothetical protein in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3512Hypothetical protein (248 aa)    
Predicted Functional Partners:
Psed_1539
Hypothetical protein (291 aa)
   
          0.679
Psed_3765
Hrp-dependent type III effector-domain-containing protein (489 aa)
   
          0.611
Psed_4394
Hypothetical protein (234 aa)
   
          0.608
Psed_2344
Hemerythrin HHE cation binding domain-containing protein (192 aa)
   
          0.582
Psed_4290
Alpha/beta hydrolase (234 aa)
   
        0.580
Psed_3994
Aromatic-L-amino-acid decarboxylase (493 aa)
   
          0.548
Psed_3988
o-succinylbenzoate--CoA ligase (524 aa)
   
        0.535
Psed_0559
o-succinylbenzoate--CoA ligase (534 aa)
   
        0.525
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (179 aa)
   
          0.516
Psed_0452
Hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands (214 aa)
   
          0.509
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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