STRINGSTRING
Psed_3531 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3531" - Ankyrin in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3531Ankyrin (504 aa)    
Predicted Functional Partners:
Psed_3790
Luciferase-like protein (474 aa)
   
          0.698
Psed_2095
Hypothetical protein (206 aa)
   
          0.656
Psed_4380
TrwC relaxase (1457 aa)
   
          0.636
Psed_0035
TrwC relaxase (1465 aa)
   
          0.632
Psed_5168
Hypothetical protein (197 aa)
   
          0.599
Psed_3530
Major facilitator superfamily protein (388 aa)
              0.596
Psed_3624
Hypothetical protein (131 aa)
   
          0.565
Psed_2937
HNH endonuclease (442 aa)
   
          0.543
Psed_6589
Hypothetical protein (272 aa)
   
          0.516
Psed_2611
ATPase AAA (743 aa)
   
          0.502
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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