STRINGSTRING
Psed_3539 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3539" - F420-dependent protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3539F420-dependent protein (141 aa)    
Predicted Functional Partners:
Psed_3060
OB-fold tRNA/helicase-type nucleic acid binding-protein (125 aa)
   
          0.620
Psed_1371
F420-dependent oxidoreductase (315 aa)
   
          0.579
Psed_0394
Hypothetical protein (211 aa)
   
          0.576
Psed_3341
F420-dependent oxidoreductase (277 aa)
   
          0.535
Psed_2116
Hypothetical protein (239 aa)
   
          0.516
Psed_1170
SARP family transcriptional regulator (252 aa)
   
          0.505
Psed_4786
Hypothetical protein (203 aa)
   
          0.477
Psed_1593
F420-dependent protein (146 aa)
   
          0.470
Psed_4633
Cupin (132 aa)
   
          0.457
Psed_5701
Hypothetical protein (144 aa)
   
          0.449
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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