STRINGSTRING
Psed_3544 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3544" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3544Hypothetical protein (101 aa)    
Predicted Functional Partners:
Psed_3545
Hypothetical protein (125 aa)
 
          0.935
Psed_0895
Hypothetical protein (145 aa)
   
          0.725
Psed_5118
DNA translocase FtsK (958 aa)
   
          0.715
Psed_5297
Hypothetical protein (358 aa)
   
          0.714
Psed_0447
Hypothetical protein (276 aa)
   
          0.704
Psed_4678
Hypothetical protein (156 aa)
   
          0.694
Psed_3281
Hypothetical protein (406 aa)
   
          0.692
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction- alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain (887 aa)
              0.681
Psed_3542
Holliday junction resolvase; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (149 aa)
              0.680
Psed_3546
ECF subfamily RNA polymerase sigma-24 subunit (363 aa)
              0.621
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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