STRINGSTRING
Psed_3558 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3558" - PucR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3558PucR family transcriptional regulator (375 aa)    
Predicted Functional Partners:
Psed_4390
Hypothetical protein (371 aa)
   
          0.724
Psed_4811
N-6 DNA methylase (585 aa)
   
          0.614
Psed_1956
FhuF/siderophore biosynthesis protein (289 aa)
   
          0.600
Psed_5615
RDD domain-containing protein (273 aa)
   
          0.585
Psed_5728
Hypothetical protein (196 aa)
   
          0.522
Psed_0172
Hypothetical protein (150 aa)
   
          0.507
Psed_4869
Peptidase M48 Ste24p (379 aa)
   
          0.490
Psed_5329
ATPase AAA (710 aa)
   
          0.485
Psed_0711
Hypothetical protein (197 aa)
   
          0.481
Psed_4405
Tetracycline repressor (237 aa)
   
          0.465
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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