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Psed_3568 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3568" - G-D-S-L family lipolytic protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3568G-D-S-L family lipolytic protein (431 aa)    
Predicted Functional Partners:
Psed_3569
Hypothetical protein (398 aa)
              0.618
Psed_5115
2-oxoglutarate dehydrogenase E1 (1263 aa)
         
  0.511
Psed_5928
Hypothetical protein (164 aa)
   
          0.450
Psed_5709
Hypothetical protein (101 aa)
 
          0.446
Psed_0256
MOSC domain-containing protein (273 aa)
 
          0.441
Psed_5525
Hypothetical protein (273 aa)
   
          0.437
Psed_1340
TetR family transcriptional regulator (190 aa)
   
          0.421
Psed_6213
2’-5’ RNA ligase; Hydrolyzes RNA 2’,3’-cyclic phosphodiester to an RNA 2’- phosphomonoester (186 aa)
              0.412
Psed_3545
Hypothetical protein (125 aa)
   
          0.413
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (265 aa)
              0.408
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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