STRINGSTRING
Psed_3606 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3606" - Rieske in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3606Rieske (2Fe-2S) domain-containing protein (339 aa)    
Predicted Functional Partners:
pdxS
Pyridoxal biosynthesis lyase pdxS; Catalyzes the formation of pyridoxal 5’-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively (309 aa)
              0.587
Psed_2377
GAF domain-containing protein (227 aa)
   
          0.539
Psed_4208
Rieske (2Fe-2S) domain-containing protein (118 aa)
   
          0.509
Psed_2348
Hypothetical protein (385 aa)
   
          0.501
Psed_3609
Phosphatidylinositol alpha-mannosyltransferase (396 aa)
              0.494
Psed_3611
CDP-alcohol phosphatidyltransferase (209 aa)
              0.494
Psed_3610
Lipid A biosynthesis acyltransferase (306 aa)
              0.494
Psed_3608
NUDIX hydrolase (186 aa)
              0.494
Psed_1753
Hypothetical protein (259 aa)
   
          0.429
Psed_3612
Histidine triad (HIT) protein (190 aa)
              0.407
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (8%) [HD]