STRINGSTRING
Psed_3626 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3626" - F420-dependent protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3626F420-dependent protein (136 aa)    
Predicted Functional Partners:
Psed_3627
Beta-lactamase domain-containing protein (234 aa)
              0.655
Psed_2937
HNH endonuclease (442 aa)
   
          0.521
Psed_2021
DoxX family protein (272 aa)
   
          0.516
Psed_6103
Hypothetical protein (200 aa)
   
          0.509
Psed_2238
F420-dependent oxidoreductase (275 aa)
 
          0.503
Psed_5682
Hypothetical protein (102 aa)
   
          0.501
Psed_3137
F420-dependent oxidoreductase (506 aa)
 
          0.487
Psed_2095
Hypothetical protein (206 aa)
   
          0.484
Psed_5168
Hypothetical protein (197 aa)
   
          0.475
Psed_3629
GCN5-like N-acetyltransferase (95 aa)
              0.471
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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