STRINGSTRING
Psed_3639 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3639" - Short-chain dehydrogenase/reductase SDR in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3639Short-chain dehydrogenase/reductase SDR (251 aa)    
Predicted Functional Partners:
Psed_0195
FAD linked oxidase domain-containing protein (457 aa)
 
   
  0.884
Psed_0175
UbiA prenyltransferase (306 aa)
 
   
  0.873
Psed_1850
Oxidoreductase domain-containing protein (735 aa)
   
 
  0.749
Psed_0174
Phosphoesterase PA-phosphatase-like protein (215 aa)
 
   
  0.724
Psed_0189
Cell wall arabinan synthesis protein (995 aa)
 
   
  0.704
Psed_3641
Shikimate dehydrogenase substrate binding domain-containing protein (300 aa)
         
  0.616
Psed_3640
Hypothetical protein (109 aa)
              0.611
Psed_0205
GtrA family protein (146 aa)
 
        0.601
Psed_0649
3-hydroxybutyryl-CoA epimerase (720 aa)
   
 
  0.584
Psed_3642
Type 11 methyltransferase (268 aa)
              0.579
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (16%) [HD]