STRINGSTRING
Psed_3642 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3642" - Type 11 methyltransferase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3642Type 11 methyltransferase (268 aa)    
Predicted Functional Partners:
Psed_3641
Shikimate dehydrogenase substrate binding domain-containing protein (300 aa)
              0.859
Psed_3640
Hypothetical protein (109 aa)
              0.810
Psed_3643
Hypothetical protein (121 aa)
              0.655
Psed_3639
Short-chain dehydrogenase/reductase SDR (251 aa)
              0.579
Psed_3646
ABC transporter (275 aa)
              0.501
Psed_3645
Polyamine-transporting ATPase (276 aa)
              0.501
Psed_3644
Regulatory protein MarR (159 aa)
              0.501
Psed_4347
Hypothetical protein (208 aa)
   
          0.463
Psed_1551
Hypothetical protein (200 aa)
   
          0.454
Psed_3135
Hypothetical protein (207 aa)
   
          0.448
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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