STRINGSTRING
Psed_3660 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3660" - Helix-turn-helix domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3660Helix-turn-helix domain-containing protein (296 aa)    
Predicted Functional Partners:
Psed_3661
Hypothetical protein (104 aa)
 
          0.894
Psed_4080
Hypothetical protein (268 aa)
 
          0.778
Psed_3659
Hypothetical protein (275 aa)
 
          0.778
Psed_3903
Hypothetical protein (131 aa)
   
          0.778
Psed_5223
Sporulation-associated protein (385 aa)
   
          0.777
Psed_3529
Helix-turn-helix domain-containing protein (162 aa)
   
          0.762
Psed_4053
Hypothetical protein (595 aa)
   
          0.758
Psed_2762
Hypothetical protein (465 aa)
   
          0.757
Psed_5726
Hypothetical protein (306 aa)
   
          0.742
Psed_2038
Sporulation and cell division protein SsgA (139 aa)
   
          0.741
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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