STRINGSTRING
Psed_3668 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3668" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3668Hypothetical protein (115 aa)    
Predicted Functional Partners:
Psed_3667
SSS sodium solute transporter superfamily protein (566 aa)
 
          0.958
Psed_3885
Hypothetical protein (820 aa)
   
          0.528
Psed_4461
Hypothetical protein (116 aa)
   
          0.508
Psed_0545
Cna B domain-containing protein (1071 aa)
   
          0.486
Psed_3339
ErfK/YbiS/YcfS/YnhG family protein (268 aa)
   
          0.485
Psed_2472
Cna B domain-containing protein (254 aa)
   
          0.429
argG
Argininosuccinate synthase (477 aa)
   
          0.426
Psed_0895
Hypothetical protein (145 aa)
   
          0.417
Psed_5626
Hypothetical protein (526 aa)
   
          0.413
Psed_5525
Hypothetical protein (273 aa)
   
          0.404
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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