STRINGSTRING
Psed_3683 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3683" - Hypothetical protein in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3683Hypothetical protein (224 aa)    
Predicted Functional Partners:
Psed_3682
Hopanoid biosynthesis associated radical SAM protein HpnH (334 aa)
              0.566
Psed_3681
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) (509 aa)
              0.550
Psed_3680
Squalene-hopene cyclase (635 aa)
              0.550
Psed_3679
Dimethylallyltranstransferase (356 aa)
              0.550
Psed_3678
Squalene-associated FAD-dependent desaturase (477 aa)
              0.550
Psed_3677
Squalene synthase HpnD (310 aa)
              0.550
Psed_3676
Squalene synthase HpnC (327 aa)
              0.550
Psed_3675
Transcriptional regulator CdaR (407 aa)
              0.423
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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