STRINGSTRING
Psed_3687 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3687" - Short-chain dehydrogenase/reductase SDR in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3687Short-chain dehydrogenase/reductase SDR (247 aa)    
Predicted Functional Partners:
Psed_3686
Hypothetical protein (309 aa)
 
          0.892
Psed_2605
3-oxoacyl-ACP reductase (264 aa)
 
 
  0.805
Psed_3685
Hypothetical protein (866 aa)
 
          0.800
Psed_1458
3-oxoacyl-ACP reductase (227 aa)
 
 
  0.797
Psed_1484
3-oxoacyl-ACP reductase (258 aa)
 
 
  0.782
Psed_4086
3-oxoacyl-ACP reductase (290 aa)
 
 
  0.777
Psed_2556
3-oxoacyl-ACP reductase (266 aa)
 
 
  0.769
Psed_2675
3-oxoacyl-ACP reductase (249 aa)
 
 
  0.762
Psed_4127
3-oxoacyl-ACP reductase (264 aa)
 
 
  0.750
Psed_2232
3-oxoacyl-ACP reductase (282 aa)
 
 
  0.745
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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