STRINGSTRING
Psed_3801 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3801" - Regulatory protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3801Regulatory protein (361 aa)    
Predicted Functional Partners:
Psed_3802
Regulatory protein MarR (142 aa)
 
          0.902
Psed_6260
Monosaccharide-transporting ATPase (543 aa)
   
   
  0.781
Psed_2570
Phosphonate-transporting ATPase (626 aa)
   
   
  0.779
Psed_4879
MarR family transcriptional regulator (159 aa)
 
        0.767
Psed_6003
Regulatory protein MarR (148 aa)
   
          0.729
Psed_3045
Regulatory protein MarR (161 aa)
 
          0.711
Psed_3734
ABC transporter permease (296 aa)
 
   
  0.688
Psed_3800
FmdB family regulatory protein (94 aa)
              0.648
Psed_1955
Glutamate synthase (1522 aa)
   
   
  0.642
Psed_6262
ABC transporter permease (293 aa)
   
   
  0.632
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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