STRINGSTRING
Psed_3847 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3847" - Polyketide cyclase/dehydrase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3847Polyketide cyclase/dehydrase (163 aa)    
Predicted Functional Partners:
Psed_1593
F420-dependent protein (146 aa)
   
          0.699
Psed_3111
Hemerythrin HHE cation binding domain-containing protein (199 aa)
   
          0.680
Psed_3846
Beta-lactamase domain-containing protein (224 aa)
              0.599
Psed_4910
Alpha/beta hydrolase (706 aa)
   
          0.596
Psed_4456
Hypothetical protein (187 aa)
   
          0.519
Psed_2937
HNH endonuclease (442 aa)
   
          0.511
Psed_3947
Transcriptional regulator (105 aa)
   
          0.490
Psed_4856
Transcriptional regulator (105 aa)
   
          0.490
Psed_3947
Transcriptional regulator (105 aa)
   
          0.490
Psed_3336
Hypothetical protein (179 aa)
   
          0.449
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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