STRINGSTRING
Psed_3880 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3880" - Response regulator receiver and ANTAR domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3880Response regulator receiver and ANTAR domain-containing protein (209 aa)    
Predicted Functional Partners:
Psed_5154
Signal transduction histidine kinase (499 aa)
 
     
  0.879
Psed_1955
Glutamate synthase (1522 aa)
         
  0.724
Psed_3055
Hypothetical protein (100 aa)
   
          0.612
Psed_6431
Sensor with HAMP domain-containing protein (240 aa)
   
          0.583
Psed_6688
Single-stranded nucleic acid binding R3H domain-containing protein (174 aa)
 
          0.572
Psed_3588
DNA polymerase I (939 aa)
              0.571
Psed_4830
Winged helix family two component transcriptional regulator (228 aa)
 
     
  0.560
Psed_1867
Winged helix family two component transcriptional regulator (230 aa)
 
     
  0.553
Psed_6020
Winged helix family two component transcriptional regulator (259 aa)
 
     
  0.526
Psed_4808
Single-strand binding protein (185 aa)
   
          0.520
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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