STRINGSTRING
Psed_3884 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3884" - LuxR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3884LuxR family transcriptional regulator (220 aa)    
Predicted Functional Partners:
Psed_0715
GAF sensor signal transduction histidine kinase (547 aa)
 
 
  0.943
Psed_2434
GAF sensor signal transduction histidine kinase (586 aa)
 
  0.920
Psed_5393
Histidine kinase (473 aa)
 
 
  0.903
Psed_4616
Histidine kinase (427 aa)
 
  0.897
Psed_3180
Histidine kinase (403 aa)
 
  0.891
Psed_6246
GAF sensor signal transduction histidine kinase (421 aa)
 
  0.869
Psed_6638
Histidine kinase (445 aa)
 
 
  0.849
Psed_4463
Histidine kinase (420 aa)
 
  0.845
Psed_6350
Histidine kinase (294 aa)
 
          0.806
Psed_3009
Histidine kinase (1850 aa)
 
 
  0.775
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (7%) [HD]