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Psed_3896 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3896" - lysyl-tRNA synthetase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3896lysyl-tRNA synthetase (597 aa)    
Predicted Functional Partners:
lysS
lysyl-tRNA synthetase (500 aa)
 
 
    0.934
Psed_3895
Hypothetical protein (300 aa)
              0.859
Psed_5085
Esterase (385 aa)
 
          0.827
Psed_3894
ErfK/YbiS/YcfS/YnhG family protein (423 aa)
 
          0.766
Psed_0282
Esterase (427 aa)
 
          0.561
Psed_5368
Alpha/beta hydrolase (374 aa)
 
          0.499
Psed_5218
Ribonuclease BN (291 aa)
   
          0.448
Psed_6189
Hypothetical protein (222 aa)
   
          0.429
Psed_5992
Ribonuclease BN (359 aa)
   
          0.424
Psed_6649
3-oxoadipate enol-lactonase (260 aa)
              0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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