STRINGSTRING
Psed_3928 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3928" - Major facilitator superfamily protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3928Major facilitator superfamily protein (434 aa)    
Predicted Functional Partners:
Psed_3929
Hypothetical protein (332 aa)
 
          0.712
Psed_3927
Hypothetical protein (192 aa)
              0.706
Psed_1960
CsbD family protein (57 aa)
   
          0.670
Psed_3540
Hypothetical protein (278 aa)
   
          0.469
Psed_4706
Transmembrane protein (133 aa)
   
          0.430
Psed_0233
Transglycosylase associated protein (90 aa)
   
          0.425
Psed_0086
ANTAR domain-containing protein (251 aa)
   
          0.424
Psed_4787
GntR family transcriptional regulator (232 aa)
              0.412
Psed_6176
acyl-CoA oxidase (634 aa)
 
          0.411
Psed_1077
Hypothetical protein (299 aa)
   
          0.411
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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