STRINGSTRING
Psed_3929 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3929" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3929Hypothetical protein (332 aa)    
Predicted Functional Partners:
Psed_2893
Hypothetical protein (197 aa)
   
        0.761
Psed_3275
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters (113 aa)
   
          0.754
Psed_3927
Hypothetical protein (192 aa)
 
          0.742
Psed_1121
Hypothetical protein (514 aa)
   
          0.714
Psed_3928
Major facilitator superfamily protein (434 aa)
 
          0.712
Psed_4736
Hypothetical protein (107 aa)
   
          0.698
nucS
Hypothetical protein; Cleaves both 3’ and 5’ ssDNA extremities of branched DNA structures (219 aa)
   
          0.694
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (92 aa)
   
          0.686
Psed_3055
Hypothetical protein (100 aa)
   
          0.657
Psed_3410
OpcA protein (317 aa)
   
          0.641
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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