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sbcD protein (Pseudonocardia dioxanivorans) - STRING interaction network
"sbcD" - Nuclease SbcCD subunit D in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
sbcDNuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3’->5’ double strand exonuclease that can open hairpins. It also has a 5’ single-strand endonuclease activity (391 aa)    
Predicted Functional Partners:
sbcC
Exonuclease SbcC; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3’->5’ double strand exonuclease that can open hairpins. It also has a 5’ single-strand endonuclease activity (1107 aa)
 
  0.999
Psed_3588
DNA polymerase I (939 aa)
   
  0.985
Psed_3283
5’-3’ exonuclease (312 aa)
   
  0.955
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (347 aa)
   
  0.942
Psed_4989
DNA ligase D (683 aa)
   
  0.903
Psed_3272
DNA polymerase LigD, polymerase domain-containing protein (661 aa)
   
  0.903
Psed_3150
ATP-dependent DNA helicase RecQ (606 aa)
   
  0.903
Psed_1993
ATP-dependent DNA helicase RecQ (701 aa)
   
  0.903
Psed_3144
Histidine kinase (602 aa)
   
  0.902
Psed_4718
ATP dependent DNA ligase (356 aa)
   
  0.901
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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