STRINGSTRING
Psed_3951 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3951" - Hypothetical protein in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3951Hypothetical protein (594 aa)    
Predicted Functional Partners:
sbcD
Nuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3’->5’ double strand exonuclease that can open hairpins. It also has a 5’ single-strand endonuclease activity (391 aa)
 
     
  0.881
sbcC
Exonuclease SbcC; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3’->5’ double strand exonuclease that can open hairpins. It also has a 5’ single-strand endonuclease activity (1107 aa)
 
     
  0.880
Psed_3940
Hypothetical protein (331 aa)
 
          0.864
Psed_3950
Hypothetical protein (133 aa)
              0.738
Psed_3952
Hypothetical protein (151 aa)
              0.630
Psed_4548
GCN5-like N-acetyltransferase (340 aa)
   
          0.604
Psed_5142
Histidine kinase (492 aa)
   
          0.507
Psed_0921
Hypothetical protein (116 aa)
   
          0.496
Psed_5036
Polyketide cyclase/dehydrase (148 aa)
   
          0.492
Psed_4537
3-methyl-adenine DNA glycosylase (340 aa)
 
          0.490
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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