STRINGSTRING
Psed_3977 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3977" - Ureidoglycolate lyase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3977Ureidoglycolate lyase (277 aa)    
Predicted Functional Partners:
Psed_3976
Hypothetical protein (240 aa)
       
  0.989
Psed_5063
Hypothetical protein (233 aa)
       
  0.930
Psed_0643
Fumarylacetoacetase (387 aa)
 
   
    0.913
Psed_6167
Urea amidolyase (282 aa)
   
 
    0.908
alc
Allantoicase (309 aa)
     
 
    0.905
Psed_3979
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (551 aa)
       
    0.861
fumC
Class II fumarate hydratase (466 aa)
   
    0.835
Psed_4593
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit (647 aa)
   
 
    0.830
Psed_4590
Succinate dehydrogenase (ubiquinone) (648 aa)
   
 
    0.830
Psed_2608
Succinate dehydrogenase (486 aa)
   
 
    0.830
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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