STRINGSTRING
Psed_3980 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3980" - Alanine rich lipoprotein LppW in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3980Alanine rich lipoprotein LppW (323 aa)    
Predicted Functional Partners:
Psed_0947
Hypothetical protein (203 aa)
   
          0.650
Psed_3816
Hypothetical protein (306 aa)
   
        0.645
Psed_3060
OB-fold tRNA/helicase-type nucleic acid binding-protein (125 aa)
   
        0.603
Psed_0430
Hypothetical protein (247 aa)
   
          0.576
Psed_4793
Hypothetical protein (191 aa)
   
          0.558
Psed_4591
Hypothetical protein (268 aa)
   
          0.554
Psed_5452
Ribonucleotide-diphosphate reductase subunit beta (324 aa)
   
          0.553
Psed_0394
Hypothetical protein (211 aa)
   
          0.550
Psed_0795
SAF domain-containing protein (224 aa)
   
          0.519
Psed_0189
Cell wall arabinan synthesis protein (995 aa)
   
          0.519
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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