STRINGSTRING
Psed_3985 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3985" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3985Hypothetical protein (341 aa)    
Predicted Functional Partners:
Psed_0458
Hypothetical protein (267 aa)
   
          0.687
Psed_4793
Hypothetical protein (191 aa)
   
          0.646
Psed_3358
Hypothetical protein (265 aa)
   
          0.640
Psed_0964
Hypothetical protein (216 aa)
   
          0.625
Psed_4476
Hypothetical protein (131 aa)
   
          0.591
Psed_2787
Hypothetical protein (204 aa)
   
          0.571
Psed_0334
Hypothetical protein (170 aa)
   
          0.562
Psed_0430
Hypothetical protein (247 aa)
   
          0.561
Psed_4786
Hypothetical protein (203 aa)
   
          0.554
Psed_4564
Hypothetical protein (122 aa)
   
          0.553
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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