STRINGSTRING
Psed_3989 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3989" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3989Hypothetical protein (246 aa)    
Predicted Functional Partners:
Psed_2841
Hypothetical protein (206 aa)
   
        0.739
Psed_4209
F420-dependent protein (143 aa)
   
          0.674
Psed_3990
Beta-lactamase domain-containing protein (372 aa)
              0.625
Psed_3437
Hypothetical protein (65 aa)
   
          0.624
Psed_0330
Hypothetical protein (197 aa)
   
          0.624
Psed_1999
Winged helix family transcriptional regulator (1107 aa)
   
          0.605
Psed_4661
Hypothetical protein (157 aa)
   
          0.534
Psed_0549
Cysteine dioxygenase type I (175 aa)
   
          0.523
Psed_2881
F420-dependent protein (154 aa)
   
          0.501
Psed_1737
Signal transduction histidine kinase (379 aa)
   
          0.476
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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