STRINGSTRING
Psed_3993 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3993" - Major facilitator superfamily protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3993Major facilitator superfamily protein (399 aa)    
Predicted Functional Partners:
Psed_3994
Aromatic-L-amino-acid decarboxylase (493 aa)
              0.654
Psed_3992
3-oxoacyl-ACP reductase (251 aa)
              0.530
Psed_3995
ABC transporter substrate-binding protein (324 aa)
              0.516
Psed_4450
Hypothetical protein (126 aa)
   
          0.514
Psed_3236
C4-dicarboxylate transporter/malic acid transport protein (336 aa)
   
          0.453
Psed_6335
C4-dicarboxylate transporter/malic acid transport protein (342 aa)
   
          0.447
Psed_1332
Branched-chain amino acid binding protein (338 aa)
   
          0.407
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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