STRINGSTRING
Psed_3997 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3997" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3997TetR family transcriptional regulator (208 aa)    
Predicted Functional Partners:
Psed_3998
long-chain-acyl-CoA dehydrogenase (383 aa)
              0.859
Psed_3999
3-hydroxy-2-methylbutyryl-CoA dehydrogenase (253 aa)
              0.810
Psed_1610
Hypothetical protein (581 aa)
   
          0.590
Psed_4000
acetyl-CoA acetyltransferase (381 aa)
              0.588
Psed_3996
methionyl-tRNA formyltransferase (322 aa)
              0.563
Psed_5110
Xenobiotic-transporting ATPase (1286 aa)
   
          0.503
Psed_5451
Hypothetical protein (323 aa)
   
          0.463
Psed_1702
butyryl-CoA dehydrogenase (385 aa)
   
          0.432
Psed_4284
Extradiol ring-cleavage dioxygenase class III protein subunit B (357 aa)
   
          0.406
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (11%) [HD]