STRINGSTRING
Psed_3999 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3999" - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_39993-hydroxy-2-methylbutyryl-CoA dehydrogenase (253 aa)    
Predicted Functional Partners:
Psed_3213
enoyl-CoA hydratase (259 aa)
   
  0.955
Psed_6148
acetyl-CoA acetyltransferase (403 aa)
   
  0.953
Psed_1715
acetyl-CoA acetyltransferase (396 aa)
   
  0.953
Psed_5916
acetyl-CoA C-acetyltransferase (395 aa)
   
  0.946
Psed_2698
enoyl-CoA hydratase (264 aa)
   
  0.942
Psed_2503
enoyl-CoA hydratase (295 aa)
   
  0.942
Psed_1606
enoyl-CoA hydratase (263 aa)
   
  0.942
Psed_0503
enoyl-CoA hydratase (265 aa)
   
  0.942
Psed_5279
enoyl-CoA hydratase (261 aa)
   
  0.940
Psed_4521
enoyl-CoA hydratase (265 aa)
   
  0.940
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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