STRINGSTRING
Psed_4006 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4006" - isovaleryl-CoA dehydrogenase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4006isovaleryl-CoA dehydrogenase (417 aa)    
Predicted Functional Partners:
Psed_4007
acyl-CoA dehydrogenase (409 aa)
     
  0.979
Psed_1603
methylcrotonoyl-CoA carboxylase (532 aa)
   
   
    0.923
Psed_6157
methylcrotonoyl-CoA carboxylase (530 aa)
   
   
    0.922
Psed_6156
methylcrotonoyl-CoA carboxylase (666 aa)
         
    0.900
Psed_1604
methylcrotonoyl-CoA carboxylase (664 aa)
         
    0.900
Psed_1345
acyl-CoA dehydrogenase (394 aa)
     
  0.862
Psed_0519
acyl-CoA dehydrogenase (416 aa)
     
  0.862
Psed_1182
acyl-CoA dehydrogenase (393 aa)
     
  0.861
Psed_4005
Carbamoyl-phosphate synthase L chain ATP-binding protein (1086 aa)
              0.861
Psed_2734
butyryl-CoA dehydrogenase (412 aa)
   
          0.771
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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