STRINGSTRING
Psed_4009 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4009" - UspA domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4009UspA domain-containing protein (175 aa)    
Predicted Functional Partners:
Psed_4011
Regulatory protein MarR (173 aa)
              0.859
Psed_4010
Major facilitator superfamily protein (451 aa)
              0.859
Psed_3885
Hypothetical protein (820 aa)
   
          0.653
Psed_4013
Short chain dehydrogenase (495 aa)
 
          0.623
Psed_4012
Hypothetical protein (132 aa)
              0.609
Psed_0121
Hypothetical protein (207 aa)
   
          0.586
Psed_0668
Hypothetical protein (94 aa)
   
          0.565
Psed_4038
Hypothetical protein (521 aa)
   
          0.556
Psed_3926
Hypothetical protein (193 aa)
   
          0.529
Psed_1516
Integral membrane protein (119 aa)
   
          0.506
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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