STRINGSTRING
Psed_4010 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4010" - Major facilitator superfamily protein in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4010Major facilitator superfamily protein (451 aa)    
Predicted Functional Partners:
Psed_4011
Regulatory protein MarR (173 aa)
              0.881
Psed_4009
UspA domain-containing protein (175 aa)
              0.859
Psed_4012
Hypothetical protein (132 aa)
              0.609
Psed_4013
Short chain dehydrogenase (495 aa)
              0.565
Psed_0147
MarR family transcriptional regulator (178 aa)
 
          0.524
Psed_2231
DoxX family protein (177 aa)
   
          0.502
Psed_6147
MarR family transcriptional regulator (186 aa)
 
          0.431
Psed_6000
Helix-turn-helix domain-containing protein (290 aa)
   
          0.429
recB
Exodeoxyribonuclease V subunit beta; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3’ direction. Cuts ssDNA a few nucleotides 3’ to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3’-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and rep [...] (1137 aa)
              0.405
Psed_6617
Na+/solute symporter (563 aa)
   
          0.400
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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