STRINGSTRING
Psed_4023 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4023" - SARP family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4023SARP family transcriptional regulator (568 aa)    
Predicted Functional Partners:
Psed_4022
Bcr/CflA subfamily drug resistance transporter (423 aa)
              0.859
Psed_6053
Hypothetical protein (160 aa)
   
          0.706
Psed_6343
Hypothetical protein (425 aa)
   
          0.637
Psed_6451
Hypothetical protein (420 aa)
   
          0.593
Psed_3111
Hemerythrin HHE cation binding domain-containing protein (199 aa)
   
          0.583
Psed_6341
Glyoxalase/bleomycin resistance protein/dioxygenase (214 aa)
   
          0.578
Psed_3245
ATPase-like protein (1005 aa)
   
          0.569
Psed_1976
Lysyl oxidase-like protein (317 aa)
   
          0.545
Psed_1706
LuxR family transcriptional regulator (940 aa)
   
          0.534
Psed_5886
Glyoxalase/bleomycin resistance protein/dioxygenase (135 aa)
   
          0.526
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (15%) [HD]